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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906567.1_cds_XP_016456707.1_50518
CDS Infomation

[gene=LOC107780660] [db_xref=GeneID:107780660] [protein=LOW QUALITY PROTEIN: polygalacturonase-2-like] [exception=unclassified translation discrepancy] [protein_id=XP_016456707.1] [location=complement(join(7599..7835,8433..8488,8491..8548,8715..8827,9142..9219,9332..9539,9805..9825,9941..10108,10226..10357,11048..11233))] [gbkey=CDS]
Sequence

ATGTCAGCTGATCACAAAATGAATGTAGAACAAGAATTCGGTCATGACTTTCAAGCTTAC
CCTTCTTATTTGAGCACCATTACTGAAGACGACAACATGAATATTGAAGAAGTTGCCAAT
AGGGTTGCATTTATTGATGTAAGTAGATTTGGAGCTAAGGGTGATGGAGTTACAGATGAT
ACTACGGCATTTGAGAAAGCTTGGAAAGAAGCATGTTCATCTAACACACCTGTGCTCTTT
GTGGTGCTCCACAACAAGAATTATCTTCTCAAACAAATCACTTTTTCAGGTCCACGCAAA
TCTTCCATTTCAATGCAGATTTTTGGATCTTTAGAAGCATCAGATAATATATCGGACTAT
AGTAAAGATAGAAGGCATTGGATTCTTTTTAATAATGTTCAAAACTTGGTTGTTGGAGGA
GGAGGAGTTATCAATGGCAATGGAAAAATATGGTGGCAAAATTCTTGCAAAACCAATATA
TCACTGCCATGCAAGAATGCACCAACGGCGTTAACCTTCTACAATTGCAAGAATTTGAAA
GTGAAGAACCTTAAGATTAAAGATGCACAACAAATTCATGTCTCATTTGAGAGATGCACA
AATGTTGAAACTTCAAATTTGATGGTGACTGCTCCTGAAAATAGCCCTAACACTGATGGA
ATCCATGTTGCAAATACTCAAAACATCCAAATTTCTGACACTGCCATTGGAACAGGTGAT
GATTGTATTTCAATTGCGAGTGGATCCCAAAAGGTGCAGGCCACGGATATTACTTGTGGT
CCAGGTCATGGTATTAGTATTGGGAGCTTAGGATCAGGGAATTCAGAAGCTCATGTGTCT
GATGTTATTGTGAGTGGAGCCAAGCTTTCTGGTACTACTAATGGACTTAGGATCAAGACT
TGGCAGGGAGGATCTGGAAATGCGAGCAACATCATATTTCAAAATGTGGAAATGCAAGGA
GTAAAACCCATAATCATAGACCAGAATTATTGTGATCAACATGATCCATGCAAACAACAG
AGTTTGGCAGTTCAAGTGAAAAATATTGTCTATGAGAACATCATAGGTTCAAGTGCGACG
AATGTGGCCATAAATTTTAATTGCAGCAAAAGCTTTCCATGCGAAGGAATTGTAATGCAG
AATATAAACTTGGTAGGGGAAGGTGGAACTGCAAAGGCTGTTTGCAGTAATGTCGAATTC
AGCAATATTATTGGAACTGTCTCACCACATTGCCCAGGAGAAAGTTTTCAAGAATAA

Peptide Sequence

PEP ID

XP_016456707.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-2-like [Nicotiana tabacum]
Sequence

MSADHKMNVEQEFGHDFQAYPSYLSTITEDDNMNIEEVANRVAFIDVSRFGAKGDGVTDD
TTAFEKAWKEACSSNTPVLFVVLHNKNYLLKQITFSGPRKSSISMQIFGSLEASDNISDY
SKDRRHWILFNNVQNLVVGGGGVINGNGKIWWQNSCKTNISLPCKNAPTALTFYNCKNLK
VKNLKIKDAQQIHVSFERCTNVETSNLMVTAPENSPNTDGIHVANTQNIQISDTAIGTGD
DCISIASGSQKVQATDITCGPGHGISIGSLGSGNSEAHVSDVIVSGAKLSGTTNGLRIKT
WQGGSGNASNIIFQNVEMQGVKXPIIIDQNYCDQHDPCKQQSLAVQVKNIVYENIIGSSA
TNVAINFNCSKSFPCEGIVMQNINLVGEGGTAKAVCSNVEFSNIIGTVSPHCPGESFQE

Transcript Sequence

Gene sequence data has not been registered.